CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1678 rna-evm.model.Chr11.1678 Chr11 67185400 67186582 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr11.1679 rna-evm.model.Chr11.1679 Chr11 67197725 67200209 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr11.168 rna-evm.model.Chr11.168 Chr11 6884178 6885334 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr11.1680 rna-evm.model.Chr11.1680 Chr11 67200855 67207754 PREDICTED: Arrestin domain-containing protein 17 nan K26229
gene-evm.TU.Chr11.1682 rna-evm.model.Chr11.1682 Chr11 67218155 67223623 PREDICTED: Molybdopterin synthase catalytic subunit GO:0006777 K03635
gene-evm.TU.Chr11.1683 rna-evm.model.Chr11.1683 Chr11 67226538 67231311 PREDICTED: Molybdopterin synthase sulfur carrier subunit nan K21232
gene-evm.TU.Chr11.1684 rna-evm.model.Chr11.1684 Chr11 67253147 67328774 PREDICTED: Sodium channel protein type 10 subunit alpha GO:0001518;GO:0005216;GO:0005248;GO:0006811;GO:0006814;GO:0016020;GO:0055085 K21862
gene-evm.TU.Chr11.1685 rna-evm.model.Chr11.1685 Chr11 67335454 67335843 uncharacterized protein nan K16795
gene-evm.TU.Chr11.1686 rna-evm.model.Chr11.1686 Chr11 67339353 67339886 uncharacterized protein nan K00983
gene-evm.TU.Chr11.1687 rna-evm.model.Chr11.1687 Chr11 67356172 67382144 PREDICTED: Uncharacterized protein KIAA0825 nan K24554

For more detailed data, you can explore the Download section to access the full dataset.