CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1662 rna-evm.model.Chr11.1662 Chr11 65845727 65857318 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr11.1668 rna-evm.model.Chr11.1668 Chr11 66135261 66135999 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr11.167 rna-evm.model.Chr11.167 Chr11 6876266 6879494 PREDICTED: Mannosyl phosphorylinositol ceramide synthase SUR1 nan K22721
gene-evm.TU.Chr11.1670 rna-evm.model.Chr11.1670 Chr11 66223686 66266406 PREDICTED: Roundabout homolog 2 nan K06774
gene-evm.TU.Chr11.1671 rna-evm.model.Chr11.1671 Chr11 66506370 66515809 uncharacterized protein nan nan
gene-evm.TU.Chr11.1672 rna-evm.model.Chr11.1672 Chr11 66515902 66516405 uncharacterized protein nan nan
gene-evm.TU.Chr11.1673 rna-evm.model.Chr11.1673 Chr11 66516410 66518987 PREDICTED: serine palmitoyltransferase [EC:2.3.1.50] nan K11379
gene-evm.TU.Chr11.1674 rna-evm.model.Chr11.1674 Chr11 66520935 66524577 PREDICTED: Mediator of RNA polymerase II transcription subunit 34 GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr11.1676 rna-evm.model.Chr11.1676 Chr11 66576532 66577395 PREDICTED: trichohyalin nan K11014
gene-evm.TU.Chr11.1677 rna-evm.model.Chr11.1677 Chr11 66696730 66797449 PREDICTED: Small conductance calcium-activated potassium channel protein GO:0005516;GO:0006813;GO:0015269;GO:0016020;GO:0016286 K04944

For more detailed data, you can explore the Download section to access the full dataset.