CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1634 rna-evm.model.Chr11.1634 Chr11 64257661 64278387 PREDICTED: Very long-chain acyl-CoA synthetase GO:0003824 K08749
gene-evm.TU.Chr11.1635 rna-evm.model.Chr11.1635 Chr11 64292831 64312075 PREDICTED: N-lysine methyltransferase KMT5A GO:0005515 K11428
gene-evm.TU.Chr11.1639 rna-evm.model.Chr11.1639 Chr11 64495407 64497953 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K23285
gene-evm.TU.Chr11.164 rna-evm.model.Chr11.164 Chr11 6837639 6840777 PREDICTED: Perlucin nan K06721
gene-evm.TU.Chr11.1640 rna-evm.model.Chr11.1640 Chr11 64508270 64529146 PREDICTED: Gonadotropin-releasing hormone II receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K04280
gene-evm.TU.Chr11.1645 rna-evm.model.Chr11.1645 Chr11 64807002 64810813 uncharacterized protein nan K22278
gene-evm.TU.Chr11.1646 rna-evm.model.Chr11.1646 Chr11 64905644 64926550 PREDICTED: Tubulin polyglutamylase complex subunit 2 GO:0018095 K16605
gene-evm.TU.Chr11.1647 rna-evm.model.Chr11.1647.1 Chr11 64938660 64957828 uncharacterized protein nan K19346
gene-evm.TU.Chr11.1648 rna-evm.model.Chr11.1648 Chr11 64960987 64980356 PREDICTED: Treslin GO:0005634;GO:0006260;GO:0010212;GO:0033314 K26117
gene-evm.TU.Chr11.165 rna-evm.model.Chr11.165 Chr11 6847449 6859062 PREDICTED: Zinc finger CCHC domain-containing protein 9 GO:0003676;GO:0008270 K17578

For more detailed data, you can explore the Download section to access the full dataset.