CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1650 rna-evm.model.Chr11.1650 Chr11 64991713 65003864 PREDICTED: Zinc transporter 5 GO:0006812;GO:0008324;GO:0016020;GO:0055085 K14692
gene-evm.TU.Chr11.1651 rna-evm.model.Chr11.1651 Chr11 65008936 65029011 PREDICTED: Regulator of nonsense transcripts 1 GO:0000184;GO:0003677;GO:0004386;GO:0005524;GO:0005737;GO:0008270;GO:0016787 K14326
gene-evm.TU.Chr11.1652 rna-evm.model.Chr11.1652 Chr11 65150860 65161665 PREDICTED: Hydroxylysine kinase nan K18201
gene-evm.TU.Chr11.1653 rna-evm.model.Chr11.1653 Chr11 65176338 65177012 uncharacterized protein nan K19511
gene-evm.TU.Chr11.1654 rna-evm.model.Chr11.1654 Chr11 65180086 65182577 uncharacterized protein nan nan
gene-evm.TU.Chr11.1655 rna-evm.model.Chr11.1655 Chr11 65208261 65209025 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K15568
gene-evm.TU.Chr11.1656 rna-evm.model.Chr11.1656 Chr11 65209065 65210347 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr11.1657 rna-evm.model.Chr11.1657 Chr11 65233039 65233248 PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like nan K09283
gene-evm.TU.Chr11.166 rna-evm.model.Chr11.166 Chr11 6866169 6869785 uncharacterized protein nan nan
gene-evm.TU.Chr11.1661 rna-evm.model.Chr11.1661 Chr11 65763019 65766844 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K22594

For more detailed data, you can explore the Download section to access the full dataset.