CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1623 rna-evm.model.Chr11.1623 Chr11 63988758 63996841 PREDICTED: Aldehyde dehydrogenase, mitochondrial GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.1625 rna-evm.model.Chr11.1625 Chr11 64046728 64057639 PREDICTED: Retinal dehydrogenase 2 GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.1626 rna-evm.model.Chr11.1626 Chr11 64058856 64075153 PREDICTED: Retinal dehydrogenase 2 GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.1627 rna-evm.model.Chr11.1627 Chr11 64079334 64088078 PREDICTED: Neuroblastoma-amplified sequence GO:0005515 K20473
gene-evm.TU.Chr11.1628_evm.TU.Chr11.1624 rna-evm.model.Chr11.1628_evm.model.Chr11.1624 Chr11 63998238 64135234 PREDICTED: Neuroblastoma-amplified sequence GO:0005515;GO:0006890 K20473
gene-evm.TU.Chr11.1629 rna-evm.model.Chr11.1629 Chr11 64145686 64159466 PREDICTED: TIR domain-containing adapter molecule 2 GO:0005515;GO:0007165 K05409
gene-evm.TU.Chr11.163 rna-evm.model.Chr11.163 Chr11 6831919 6834680 PREDICTED: Succinate dehydrogenase assembly factor 4, mitochondrial nan nan
gene-evm.TU.Chr11.1630 rna-evm.model.Chr11.1630 Chr11 64162271 64188766 PREDICTED: MAU2 chromatid cohesion factor homolog GO:0007064 K11266
gene-evm.TU.Chr11.1632 rna-evm.model.Chr11.1632 Chr11 64206813 64239967 PREDICTED: Very long-chain acyl-CoA synthetase GO:0003824 K08749
gene-evm.TU.Chr11.1633 rna-evm.model.Chr11.1633 Chr11 64242240 64250154 PREDICTED: Very long-chain acyl-CoA synthetase GO:0003824 K08749

For more detailed data, you can explore the Download section to access the full dataset.