CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1609 rna-evm.model.Chr11.1609 Chr11 63830879 63831535 uncharacterized protein nan K12063
gene-evm.TU.Chr11.161 rna-evm.model.Chr11.161 Chr11 6798455 6804866 PREDICTED: cell wall anchor protein GO:0004867 K11322
gene-evm.TU.Chr11.1615 rna-evm.model.Chr11.1615 Chr11 63836343 63837644 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr11.1617 rna-evm.model.Chr11.1617 Chr11 63887347 63897382 PREDICTED: mucin-5AC nan K22023
gene-evm.TU.Chr11.1618 rna-evm.model.Chr11.1618 Chr11 63909795 63925765 PREDICTED: chitinase [EC:3.2.1.14] nan K05952
gene-evm.TU.Chr11.1619 rna-evm.model.Chr11.1619 Chr11 63935530 63940679 PREDICTED: Tubulin alpha-3 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr11.162 rna-evm.model.Chr11.162 Chr11 6808045 6822325 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr11.1620 rna-evm.model.Chr11.1620 Chr11 63950089 63951258 PREDICTED: Archaemetzincin-2 GO:0006508;GO:0008233 K06974
gene-evm.TU.Chr11.1621 rna-evm.model.Chr11.1621 Chr11 63966551 63968023 PREDICTED: Cholesterol 25-hydroxylase-like protein 1, member 2 GO:0005506;GO:0008610;GO:0016491;GO:0055114 K10223
gene-evm.TU.Chr11.1622 rna-evm.model.Chr11.1622 Chr11 63977724 63987328 PREDICTED: Retinal dehydrogenase 2 GO:0016491;GO:0055114 K07249

For more detailed data, you can explore the Download section to access the full dataset.