CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1596 rna-evm.model.Chr11.1596 Chr11 63534134 63538782 PREDICTED: Heme-binding protein 2 nan nan
gene-evm.TU.Chr11.1598 rna-evm.model.Chr11.1598 Chr11 63570168 63572897 PREDICTED: Heme-binding protein 2 nan K12305
gene-evm.TU.Chr11.1599 rna-evm.model.Chr11.1599 Chr11 63602942 63610912 PREDICTED: Retinal homeobox protein Rx1 GO:0003677 K09452
gene-evm.TU.Chr11.16 rna-evm.model.Chr11.16 Chr11 886741 907364 PREDICTED: Helicase with zinc finger domain 2 GO:0003723;GO:0004540 K25165
gene-evm.TU.Chr11.1600 rna-evm.model.Chr11.1600.1 Chr11 63672344 63734648 PREDICTED: C-myc promoter-binding protein nan K20163
gene-evm.TU.Chr11.1601 rna-evm.model.Chr11.1601 Chr11 63746981 63758405 PREDICTED: Poly(A) RNA polymerase gld-2 homolog A GO:0016779 K14079
gene-evm.TU.Chr11.1602 rna-evm.model.Chr11.1602 Chr11 63762875 63775626 PREDICTED: Spermatogenesis-associated protein 5-like protein 1 GO:0005524 K26051
gene-evm.TU.Chr11.1603 rna-evm.model.Chr11.1603 Chr11 63787483 63791346 PREDICTED: 39S ribosomal protein L54, mitochondrial nan K17435
gene-evm.TU.Chr11.1604 rna-evm.model.Chr11.1604 Chr11 63796873 63801870 PREDICTED: Cyclic AMP-responsive element-binding protein 3-like protein 3 GO:0003677;GO:0003700;GO:0006355 K09048
gene-evm.TU.Chr11.1605 rna-evm.model.Chr11.1605 Chr11 63816634 63817185 PREDICTED: Uncharacterized protein KIAA1958 nan K21754

For more detailed data, you can explore the Download section to access the full dataset.