CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1584 rna-evm.model.Chr11.1584 Chr11 63167031 63168110 PREDICTED: protein kinase D [EC:2.7.11.13] nan K01142
gene-evm.TU.Chr11.1588 rna-evm.model.Chr11.1588 Chr11 63244549 63255785 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr11.1589 rna-evm.model.Chr11.1589 Chr11 63397066 63400725 PREDICTED: Carbohydrate sulfotransferase 8 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr11.159 rna-evm.model.Chr11.159 Chr11 6769530 6788076 PREDICTED: 15-hydroxyprostaglandin dehydrogenase [NAD(+)] nan K00069
gene-evm.TU.Chr11.1590 rna-evm.model.Chr11.1590 Chr11 63409533 63413720 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr11.1591 rna-evm.model.Chr11.1591.1 Chr11 63418112 63464646 PREDICTED: DNA polymerase iota GO:0003684;GO:0006281 K03510
gene-evm.TU.Chr11.1592 rna-evm.model.Chr11.1592 Chr11 63467725 63477175 PREDICTED: Probable ribosome biogenesis protein RLP24 nan K02896
gene-evm.TU.Chr11.1593 rna-evm.model.Chr11.1593 Chr11 63473683 63475918 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr11.1594 rna-evm.model.Chr11.1594 Chr11 63486375 63489252 PREDICTED: chitin deacetylase GO:0005975;GO:0016810 K10609
gene-evm.TU.Chr11.1595 rna-evm.model.Chr11.1595 Chr11 63500742 63528370 PREDICTED: Peptidyl-glycine alpha-amidating monooxygenase B GO:0003824;GO:0005515;GO:0006518;GO:0016020 K24006

For more detailed data, you can explore the Download section to access the full dataset.