CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1574 rna-evm.model.Chr11.1574 Chr11 62543887 62558518 PREDICTED: Alpha-aminoadipic semialdehyde dehydrogenase GO:0016491;GO:0055114 K14085
gene-evm.TU.Chr11.1575 rna-evm.model.Chr11.1575 Chr11 62598208 62643072 PREDICTED: Alpha-2-macroglobulin-like protein 1 GO:0004866;GO:0005515;GO:0005576;GO:0005615 K23593
gene-evm.TU.Chr11.1576 rna-evm.model.Chr11.1576 Chr11 62650089 62759927 PREDICTED: Protein lin-10 GO:0005515 K04531
gene-evm.TU.Chr11.1577 rna-evm.model.Chr11.1577.1 Chr11 62769116 62818379 PREDICTED: Chromodomain-helicase-DNA-binding protein 1 GO:0005524 K20091
gene-evm.TU.Chr11.1578 rna-evm.model.Chr11.1578 Chr11 62830469 62884772 PREDICTED: Retinal dehydrogenase 1 GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.1579 rna-evm.model.Chr11.1579 Chr11 62887751 62900490 PREDICTED: Retinal dehydrogenase 1 GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.158 rna-evm.model.Chr11.158 Chr11 6718467 6763344 PREDICTED: Ankyrin repeat and death domain-containing protein 1A GO:0005515;GO:0007165 K15503
gene-evm.TU.Chr11.1580 rna-evm.model.Chr11.1580 Chr11 62903686 62905566 PREDICTED: b(0,+)-type amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13868
gene-evm.TU.Chr11.1581 rna-evm.model.Chr11.1581 Chr11 62912357 62914541 PREDICTED: b(0,+)-type amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13868
gene-evm.TU.Chr11.1583 rna-evm.model.Chr11.1583 Chr11 63118886 63129516 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K08375

For more detailed data, you can explore the Download section to access the full dataset.