CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1561 rna-evm.model.Chr11.1561 Chr11 62021111 62022208 PREDICTED: protein kinase D [EC:2.7.11.13] nan K17521
gene-evm.TU.Chr11.1564 rna-evm.model.Chr11.1564 Chr11 62167754 62169145 PREDICTED: zinc finger MYM-type protein 2-like nan K24297
gene-evm.TU.Chr11.1565 rna-evm.model.Chr11.1565 Chr11 62231319 62243078 PREDICTED: Neuropeptide receptor 15 GO:0004930;GO:0007186;GO:0016020 K04223
gene-evm.TU.Chr11.1567 rna-evm.model.Chr11.1567 Chr11 62316134 62319823 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr11.1568 rna-evm.model.Chr11.1568 Chr11 62380086 62390406 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K15255
gene-evm.TU.Chr11.157 rna-evm.model.Chr11.157 Chr11 6697780 6702458 PREDICTED: Inositol 1,4,5-trisphosphate receptor-interacting protein nan K23092
gene-evm.TU.Chr11.1570 rna-evm.model.Chr11.1570 Chr11 62431237 62432172 PREDICTED: coatomer subunit beta' nan K06241
gene-evm.TU.Chr11.1571 rna-evm.model.Chr11.1571 Chr11 62460411 62462386 PREDICTED: solute carrier family 6 (neurotransmitter transporter) member 19 nan nan
gene-evm.TU.Chr11.1572 rna-evm.model.Chr11.1572 Chr11 62483506 62502300 PREDICTED: Probable E3 ubiquitin-protein ligase HERC2 GO:0004842;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr11.1573 rna-evm.model.Chr11.1573 Chr11 62510479 62539857 PREDICTED: Coiled-coil domain-containing protein 87 nan K05035

For more detailed data, you can explore the Download section to access the full dataset.