CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1549 rna-evm.model.Chr11.1549.1 Chr11 61708983 61721093 PREDICTED: Uncharacterized protein C1orf189 homolog nan nan
gene-evm.TU.Chr11.155 rna-evm.model.Chr11.155 Chr11 6655403 6671756 PREDICTED: golgin subfamily B member 1 nan K09291
gene-evm.TU.Chr11.1550 rna-evm.model.Chr11.1550 Chr11 61727204 61735440 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.1551 rna-evm.model.Chr11.1551 Chr11 61743452 61767144 PREDICTED: adhesin nan nan
gene-evm.TU.Chr11.1552 rna-evm.model.Chr11.1552 Chr11 61767281 61772271 uncharacterized protein nan K04853
gene-evm.TU.Chr11.1553 rna-evm.model.Chr11.1553 Chr11 61780400 61824457 PREDICTED: Leucine-rich repeat serine/threonine-protein kinase 1 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K08843
gene-evm.TU.Chr11.1556 rna-evm.model.Chr11.1556.4 Chr11 61856334 61925848 PREDICTED: Sodium/calcium exchanger 3 GO:0005432;GO:0006816;GO:0007154;GO:0016020;GO:0016020;GO:0055085 K05849
gene-evm.TU.Chr11.1558 rna-evm.model.Chr11.1558 Chr11 61989748 61999535 PREDICTED: C-type mannose receptor 2 nan K06560
gene-evm.TU.Chr11.156 rna-evm.model.Chr11.156 Chr11 6681915 6685621 PREDICTED: golgin subfamily B member 1 nan nan
gene-evm.TU.Chr11.1560 rna-evm.model.Chr11.1560 Chr11 62008434 62009579 PREDICTED: ATP-binding protein involved in chromosome partitioning nan K10051

For more detailed data, you can explore the Download section to access the full dataset.