CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1532 rna-evm.model.Chr11.1532 Chr11 61272120 61276343 PREDICTED: Repressor of yield of DENV protein homolog nan nan
gene-evm.TU.Chr11.1533 rna-evm.model.Chr11.1533 Chr11 61279278 61284069 PREDICTED: Repressor of yield of DENV protein homolog nan nan
gene-evm.TU.Chr11.1536 rna-evm.model.Chr11.1536 Chr11 61320773 61332056 PREDICTED: Potassium channel subfamily K member 18 GO:0005267;GO:0016020;GO:0071805 K05323
gene-evm.TU.Chr11.1538 rna-evm.model.Chr11.1538 Chr11 61353344 61361074 PREDICTED: NEDD8 ultimate buster 1 GO:0005515 K23705
gene-evm.TU.Chr11.154 rna-evm.model.Chr11.154 Chr11 6515874 6572600 PREDICTED: golgin subfamily B member 1 nan K09291
gene-evm.TU.Chr11.1540 rna-evm.model.Chr11.1540 Chr11 61409573 61419005 PREDICTED: Potential protein lysine methyltransferase SET5 GO:0005515 K24635
gene-evm.TU.Chr11.1541 rna-evm.model.Chr11.1541 Chr11 61437698 61459559 PREDICTED: Neuropeptide Y receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04204
gene-evm.TU.Chr11.1543 rna-evm.model.Chr11.1543.4 Chr11 61469493 61570912 PREDICTED: Leucine-rich repeat-containing protein 49 GO:0005515 K16606
gene-evm.TU.Chr11.1547 rna-evm.model.Chr11.1547 Chr11 61621141 61686891 PREDICTED: Excitatory amino acid transporter 2 GO:0015293;GO:0016020 K05613
gene-evm.TU.Chr11.1548 rna-evm.model.Chr11.1548 Chr11 61690773 61704560 PREDICTED: angiopoietin-like 3 nan K25356

For more detailed data, you can explore the Download section to access the full dataset.