CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1521 rna-evm.model.Chr11.1521 Chr11 61039972 61055940 PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial GO:0051536;GO:0055114 K03940
gene-evm.TU.Chr11.1522 rna-evm.model.Chr11.1522.1 Chr11 61057699 61090495 PREDICTED: E3 SUMO-protein ligase PIAS1 GO:0008270 K16063
gene-evm.TU.Chr11.1523 rna-evm.model.Chr11.1523 Chr11 61100293 61163926 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.1524 rna-evm.model.Chr11.1524 Chr11 61171140 61176740 PREDICTED: laminin, alpha 1/2 nan K23368
gene-evm.TU.Chr11.1527 rna-evm.model.Chr11.1527 Chr11 61192751 61200451 uncharacterized protein nan K03529
gene-evm.TU.Chr11.1528 rna-evm.model.Chr11.1528 Chr11 61203360 61220124 PREDICTED: Threonine--tRNA ligase, cytoplasmic GO:0000166;GO:0004812;GO:0004829;GO:0005524;GO:0005737;GO:0006418;GO:0006435;GO:0043039 K01868
gene-evm.TU.Chr11.1529 rna-evm.model.Chr11.1529 Chr11 61231649 61239714 PREDICTED: Metaxin-1 GO:0001401 K17776
gene-evm.TU.Chr11.153 rna-evm.model.Chr11.153 Chr11 6496116 6498758 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K07184
gene-evm.TU.Chr11.1530 rna-evm.model.Chr11.1530 Chr11 61242212 61247164 PREDICTED: Methylmalonyl-CoA epimerase, mitochondrial nan K05606
gene-evm.TU.Chr11.1531 rna-evm.model.Chr11.1531 Chr11 61258245 61269222 PREDICTED: Repressor of yield of DENV protein nan K19461

For more detailed data, you can explore the Download section to access the full dataset.