CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1490 rna-evm.model.Chr11.1490 Chr11 59712104 59716949 uncharacterized protein nan K25828
gene-evm.TU.Chr11.1491 rna-evm.model.Chr11.1491 Chr11 59747290 59775538 PREDICTED: Ras-like protein family member 12 GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07854
gene-evm.TU.Chr11.1492 rna-evm.model.Chr11.1492 Chr11 59782454 59802749 PREDICTED: E3 ubiquitin-protein ligase ZSWIM2 GO:0008270;GO:0061630 K15716
gene-evm.TU.Chr11.1493 rna-evm.model.Chr11.1493 Chr11 59864027 59865151 uncharacterized protein nan K25609
gene-evm.TU.Chr11.1495 rna-evm.model.Chr11.1495 Chr11 59959180 59960142 PREDICTED: coatomer subunit beta' nan K20283
gene-evm.TU.Chr11.1497 rna-evm.model.Chr11.1497 Chr11 60028114 60037901 PREDICTED: Gonadotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K04280
gene-evm.TU.Chr11.1499 rna-evm.model.Chr11.1499 Chr11 60302870 60308073 uncharacterized protein nan K09659
gene-evm.TU.Chr11.15 rna-evm.model.Chr11.15 Chr11 879041 883518 uncharacterized protein nan K10135
gene-evm.TU.Chr11.1501 rna-evm.model.Chr11.1501 Chr11 60406472 60412937 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1504 rna-evm.model.Chr11.1504 Chr11 60520326 60521490 PREDICTED: sporulation-specific protein 15-like nan K12211

For more detailed data, you can explore the Download section to access the full dataset.