CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1477 rna-evm.model.Chr11.1477 Chr11 59262836 59269668 PREDICTED: Probable ADP-dependent glucokinase GO:0005975;GO:0016773 K08074
gene-evm.TU.Chr11.148 rna-evm.model.Chr11.148 Chr11 6344320 6363049 PREDICTED: Thrombospondin type-1 domain-containing protein 4 GO:0008233 K23369
gene-evm.TU.Chr11.1480 rna-evm.model.Chr11.1480 Chr11 59375490 59395788 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.1481 rna-evm.model.Chr11.1481 Chr11 59399662 59431920 uncharacterized protein nan K25781
gene-evm.TU.Chr11.1482 rna-evm.model.Chr11.1482 Chr11 59442546 59446829 uncharacterized protein nan nan
gene-evm.TU.Chr11.1484 rna-evm.model.Chr11.1484 Chr11 59529274 59542166 uncharacterized protein nan K24045
gene-evm.TU.Chr11.1485 rna-evm.model.Chr11.1485 Chr11 59551470 59572424 PREDICTED: Histone-lysine N-methyltransferase set-1 GO:0005515 K11428
gene-evm.TU.Chr11.1486 rna-evm.model.Chr11.1486 Chr11 59575520 59596766 PREDICTED: M-phase phosphoprotein 8 nan K11294
gene-evm.TU.Chr11.1488 rna-evm.model.Chr11.1488 Chr11 59655138 59690031 PREDICTED: YSIRK-type signal peptide-containing protein nan K15510
gene-evm.TU.Chr11.1489 rna-evm.model.Chr11.1489 Chr11 59700221 59709741 uncharacterized protein nan K03752

For more detailed data, you can explore the Download section to access the full dataset.