CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1467 rna-evm.model.Chr11.1467 Chr11 59038530 59049738 PREDICTED: Protein PRQFV-amide GO:0004842 K22371
gene-evm.TU.Chr11.1468 rna-evm.model.Chr11.1468 Chr11 59077520 59101182 PREDICTED: calcium-responsive transcription factor GO:0008270 K17604
gene-evm.TU.Chr11.1469 rna-evm.model.Chr11.1469 Chr11 59101248 59107045 PREDICTED: methylosome protein 50 nan K21595
gene-evm.TU.Chr11.147 rna-evm.model.Chr11.147 Chr11 6332107 6332964 PREDICTED: CD109 antigen nan K11548
gene-evm.TU.Chr11.1470 rna-evm.model.Chr11.1470 Chr11 59109051 59111016 PREDICTED: calcium-responsive transcription factor nan K17604
gene-evm.TU.Chr11.1471 rna-evm.model.Chr11.1471 Chr11 59111025 59114120 PREDICTED: calcium-responsive transcription factor nan nan
gene-evm.TU.Chr11.1472 rna-evm.model.Chr11.1472 Chr11 59114185 59122594 PREDICTED: HAUS augmin-like complex subunit 1 GO:0051225;GO:0070652 K16584
gene-evm.TU.Chr11.1473 rna-evm.model.Chr11.1473 Chr11 59164949 59166243 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr11.1475 rna-evm.model.Chr11.1475 Chr11 59213197 59229980 PREDICTED: Enhancer of mRNA-decapping protein 3 nan K12615
gene-evm.TU.Chr11.1476 rna-evm.model.Chr11.1476 Chr11 59229365 59245238 PREDICTED: TM2 domain-containing protein 3 nan nan

For more detailed data, you can explore the Download section to access the full dataset.