CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1450 rna-evm.model.Chr11.1450.1 Chr11 58520492 58526976 PREDICTED: UbiA prenyltransferase domain-containing protein 1 homolog GO:0016020;GO:0016765 K00810
gene-evm.TU.Chr11.1451 rna-evm.model.Chr11.1451 Chr11 58548682 58570152 uncharacterized protein nan K10110
gene-evm.TU.Chr11.1453 rna-evm.model.Chr11.1453 Chr11 58586714 58600869 PREDICTED: 5-formyltetrahydrofolate cyclo-ligase nan K01934
gene-evm.TU.Chr11.1454 rna-evm.model.Chr11.1454 Chr11 58613230 58614434 PREDICTED: Putative histone H1.6 GO:0000786;GO:0003677;GO:0005634;GO:0006334 K11275
gene-evm.TU.Chr11.1455 rna-evm.model.Chr11.1455 Chr11 58617046 58656740 PREDICTED: E3 ubiquitin-protein ligase NEDD4-like GO:0004842;GO:0005515 K13305
gene-evm.TU.Chr11.1457 rna-evm.model.Chr11.1457 Chr11 58666558 58667364 PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like, partial nan K06896
gene-evm.TU.Chr11.1459 rna-evm.model.Chr11.1459 Chr11 58705775 58708503 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr11.1463 rna-evm.model.Chr11.1463 Chr11 58932793 58933308 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr11.1464 rna-evm.model.Chr11.1464 Chr11 59006367 59010882 PREDICTED: Twitchin GO:0005515 K12567
gene-evm.TU.Chr11.1465 rna-evm.model.Chr11.1465 Chr11 59013204 59015921 PREDICTED: Twitchin GO:0005515 K12567

For more detailed data, you can explore the Download section to access the full dataset.