CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1426 rna-evm.model.Chr11.1426 Chr11 57665088 57674186 PREDICTED: DTW domain-containing protein 2 nan K05812
gene-evm.TU.Chr11.1427 rna-evm.model.Chr11.1427 Chr11 57699680 57705182 PREDICTED: Alpha-ketoglutarate-dependent taurine dioxygenase GO:0016491;GO:0055114 K06912
gene-evm.TU.Chr11.1428 rna-evm.model.Chr11.1428 Chr11 57718543 57730987 PREDICTED: Neuronal acetylcholine receptor subunit non-alpha-2 GO:0003676;GO:0005230;GO:0006811;GO:0016020 K04808
gene-evm.TU.Chr11.1429_evm.TU.Chr11.1430 rna-evm.model.Chr11.1429_evm.model.Chr11.1430 Chr11 57732104 57752619 PREDICTED: Zinc finger protein 79 GO:0003676 K09191
gene-evm.TU.Chr11.143 rna-evm.model.Chr11.143.4 Chr11 6150565 6227619 PREDICTED: Furin GO:0004252;GO:0006508 K01349
gene-evm.TU.Chr11.1431 rna-evm.model.Chr11.1431 Chr11 57904816 57905547 uncharacterized protein nan nan
gene-evm.TU.Chr11.1432 rna-evm.model.Chr11.1432.6 Chr11 57976115 58017651 PREDICTED: Opioid-binding protein/cell adhesion molecule homolog nan K06774
gene-evm.TU.Chr11.1433 rna-evm.model.Chr11.1433 Chr11 58069834 58070722 PREDICTED: glutamate receptor, ionotropic kainate 4 nan nan
gene-evm.TU.Chr11.1436 rna-evm.model.Chr11.1436 Chr11 58271745 58274509 uncharacterized protein nan K24225
gene-evm.TU.Chr11.1437 rna-evm.model.Chr11.1437 Chr11 58289878 58298564 PREDICTED: Organic cation transporter-like protein GO:0016020;GO:0022857;GO:0055085 K08202

For more detailed data, you can explore the Download section to access the full dataset.