CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1438 rna-evm.model.Chr11.1438 Chr11 58303791 58326395 PREDICTED: Probable 39S ribosomal protein L24, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02895
gene-evm.TU.Chr11.1439 rna-evm.model.Chr11.1439 Chr11 58326678 58332954 PREDICTED: Myeloid-derived growth factor nan nan
gene-evm.TU.Chr11.144 rna-evm.model.Chr11.144 Chr11 6248836 6284764 PREDICTED: Ankycorbin GO:0005515 K15502
gene-evm.TU.Chr11.1440 rna-evm.model.Chr11.1440 Chr11 58343139 58343781 uncharacterized protein nan K12021
gene-evm.TU.Chr11.1442 rna-evm.model.Chr11.1442 Chr11 58351726 58355452 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr11.1443 rna-evm.model.Chr11.1443 Chr11 58356041 58371437 PREDICTED: Kinesin-like protein KIF24 GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017 K10393
gene-evm.TU.Chr11.1444 rna-evm.model.Chr11.1444 Chr11 58386357 58387520 uncharacterized protein nan K06867
gene-evm.TU.Chr11.1446 rna-evm.model.Chr11.1446 Chr11 58394800 58397015 PREDICTED: Endoglucanase nan nan
gene-evm.TU.Chr11.1447 rna-evm.model.Chr11.1447 Chr11 58398217 58425456 PREDICTED: Aladin GO:0005515 K14320
gene-evm.TU.Chr11.1449 rna-evm.model.Chr11.1449.6 Chr11 58451778 58508418 PREDICTED: Protein casc4 nan K14972

For more detailed data, you can explore the Download section to access the full dataset.