CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1416 rna-evm.model.Chr11.1416 Chr11 56888403 56891114 PREDICTED: fumarate hydratase, class II [EC:4.2.1.2] nan nan
gene-evm.TU.Chr11.1417 rna-evm.model.Chr11.1417 Chr11 56910462 56911180 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07482
gene-evm.TU.Chr11.1418 rna-evm.model.Chr11.1418 Chr11 57041300 57060979 PREDICTED: Chitin synthase chs-2 GO:0003774;GO:0005524;GO:0016459;GO:0016758 K00698
gene-evm.TU.Chr11.1419 rna-evm.model.Chr11.1419 Chr11 57121499 57174710 PREDICTED: WD repeat-containing protein 93 GO:0016651;GO:0022900 K24762
gene-evm.TU.Chr11.142 rna-evm.model.Chr11.142 Chr11 6140238 6144597 PREDICTED: Leucine-rich repeat-containing protein 28 GO:0005515 K19613
gene-evm.TU.Chr11.1420 rna-evm.model.Chr11.1420 Chr11 57174824 57189457 PREDICTED: Peroxisomal membrane protein 11B GO:0005779;GO:0016559 K13352
gene-evm.TU.Chr11.1421 rna-evm.model.Chr11.1421 Chr11 57192929 57197588 PREDICTED: U6 snRNA-associated Sm-like protein LSm6 GO:0000398;GO:0005732 K12625
gene-evm.TU.Chr11.1422 rna-evm.model.Chr11.1422 Chr11 57246830 57250685 PREDICTED: Dynein heavy chain (Fragment) nan K09168
gene-evm.TU.Chr11.1423 rna-evm.model.Chr11.1423.1 Chr11 57448104 57529831 PREDICTED: Lachesin nan K06774
gene-evm.TU.Chr11.1425 rna-evm.model.Chr11.1425 Chr11 57628297 57665058 PREDICTED: Megakaryocyte-associated tyrosine-protein kinase GO:0004672;GO:0005524;GO:0005856;GO:0006468 K04447

For more detailed data, you can explore the Download section to access the full dataset.