CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1402 rna-evm.model.Chr11.1402 Chr11 56251750 56348926 PREDICTED: Acetylcholine receptor subunit alpha-like 1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.1403 rna-evm.model.Chr11.1403 Chr11 56412518 56420356 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1404 rna-evm.model.Chr11.1404 Chr11 56449366 56456531 PREDICTED: Tetraspanin-33 GO:0016020 K17346
gene-evm.TU.Chr11.1407 rna-evm.model.Chr11.1407 Chr11 56662313 56662642 uncharacterized protein nan nan
gene-evm.TU.Chr11.1409 rna-evm.model.Chr11.1409 Chr11 56749611 56754473 uncharacterized protein nan nan
gene-evm.TU.Chr11.141 rna-evm.model.Chr11.141 Chr11 6127188 6135785 PREDICTED: Transmembrane 6 superfamily member 1 nan K25361
gene-evm.TU.Chr11.1412 rna-evm.model.Chr11.1412 Chr11 56860109 56869295 uncharacterized protein nan nan
gene-evm.TU.Chr11.1413 rna-evm.model.Chr11.1413 Chr11 56870488 56872550 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr11.1414 rna-evm.model.Chr11.1414 Chr11 56875596 56882608 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr11.1415 rna-evm.model.Chr11.1415 Chr11 56884730 56888260 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan

For more detailed data, you can explore the Download section to access the full dataset.