CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1394 rna-evm.model.Chr11.1394 Chr11 55920168 55933699 PREDICTED: Pentatricopeptide repeat-containing protein 2, mitochondrial GO:0005739;GO:0050684 K17711
gene-evm.TU.Chr11.1395 rna-evm.model.Chr11.1395 Chr11 55934005 56000665 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005509;GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr11.1396 rna-evm.model.Chr11.1396 Chr11 56077849 56103178 PREDICTED: Acetylcholine receptor subunit beta-like 1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.1397 rna-evm.model.Chr11.1397 Chr11 56108789 56142545 PREDICTED: Acetylcholine receptor subunit beta-like 1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.1398 rna-evm.model.Chr11.1398 Chr11 56176517 56196184 PREDICTED: Acetylcholine receptor subunit beta-like 1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.1399 rna-evm.model.Chr11.1399 Chr11 56201532 56216500 PREDICTED: Acetylcholine receptor subunit beta-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.14 rna-evm.model.Chr11.14 Chr11 840997 860983 uncharacterized protein nan nan
gene-evm.TU.Chr11.140 rna-evm.model.Chr11.140 Chr11 6118116 6126581 PREDICTED: Dolichol kinase GO:0004168;GO:0043048 K00902
gene-evm.TU.Chr11.1400 rna-evm.model.Chr11.1400 Chr11 56220719 56223658 PREDICTED: Acetylcholine receptor subunit beta-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr11.1401 rna-evm.model.Chr11.1401 Chr11 56236744 56246612 PREDICTED: Acetylcholine receptor subunit beta-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312

For more detailed data, you can explore the Download section to access the full dataset.