CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1380 rna-evm.model.Chr11.1380 Chr11 55516458 55521071 PREDICTED: Zinc finger protein 366 GO:0003676 K09228
gene-evm.TU.Chr11.1381 rna-evm.model.Chr11.1381 Chr11 55525469 55542963 uncharacterized protein nan K13093
gene-evm.TU.Chr11.1382 rna-evm.model.Chr11.1382 Chr11 55547394 55549141 uncharacterized protein nan K14021
gene-evm.TU.Chr11.1383 rna-evm.model.Chr11.1383 Chr11 55549455 55553911 PREDICTED: Apoptosis regulator Bcl-2 GO:0042981 K04570
gene-evm.TU.Chr11.1385 rna-evm.model.Chr11.1385 Chr11 55596651 55623063 PREDICTED: Beta-hexosaminidase GO:0003677;GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr11.1387 rna-evm.model.Chr11.1387 Chr11 55641423 55651906 PREDICTED: Beta-hexosaminidase GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr11.1388 rna-evm.model.Chr11.1388 Chr11 55657236 55673782 uncharacterized protein nan K07164
gene-evm.TU.Chr11.139 rna-evm.model.Chr11.139 Chr11 6113401 6117906 PREDICTED: Peroxisomal NADH pyrophosphatase NUDT12 GO:0005515;GO:0016787;GO:0046872 K03426
gene-evm.TU.Chr11.1391_evm.TU.Chr11.1389 rna-evm.model.Chr11.1391_evm.model.Chr11.1389 Chr11 55760523 55866760 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 7 GO:0004222;GO:0006508;GO:0008233 K08622
gene-evm.TU.Chr11.1392 rna-evm.model.Chr11.1392 Chr11 55868116 55894851 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312

For more detailed data, you can explore the Download section to access the full dataset.