CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1371 rna-evm.model.Chr11.1371 Chr11 55270955 55286616 PREDICTED: Leucine-rich repeat-containing protein 61 GO:0005515 K25443
gene-evm.TU.Chr11.1372 rna-evm.model.Chr11.1372 Chr11 55292729 55303939 PREDICTED: ubiquinol-cytochrome c reductase subunit 10 GO:0008121;GO:0009055 K00420
gene-evm.TU.Chr11.1373 rna-evm.model.Chr11.1373 Chr11 55310272 55323262 PREDICTED: Glycosylated lysosomal membrane protein nan nan
gene-evm.TU.Chr11.1374 rna-evm.model.Chr11.1374 Chr11 55369653 55380410 PREDICTED: Tumor necrosis factor alpha-induced protein 8 GO:0042981 K26390
gene-evm.TU.Chr11.1375 rna-evm.model.Chr11.1375 Chr11 55383822 55385568 uncharacterized protein nan nan
gene-evm.TU.Chr11.1376 rna-evm.model.Chr11.1376 Chr11 55394881 55399074 PREDICTED: 40S ribosomal protein S6 GO:0003735;GO:0005840;GO:0006412 K02991
gene-evm.TU.Chr11.1377 rna-evm.model.Chr11.1377.1 Chr11 55399294 55435203 PREDICTED: TP53-binding protein 1 nan K20915
gene-evm.TU.Chr11.1378 rna-evm.model.Chr11.1378 Chr11 55449122 55495336 PREDICTED: Chondroitin sulfate proteoglycan 4 nan K08115
gene-evm.TU.Chr11.1379 rna-evm.model.Chr11.1379 Chr11 55498141 55507427 PREDICTED: RNA-binding protein 8A GO:0003676;GO:0003723;GO:0005634;GO:0005737;GO:0006396 K12876
gene-evm.TU.Chr11.138 rna-evm.model.Chr11.138 Chr11 6062801 6072533 PREDICTED: Serine/threonine-protein kinase ULK3 GO:0004672;GO:0005524;GO:0006468 K21358

For more detailed data, you can explore the Download section to access the full dataset.