CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1362 rna-evm.model.Chr11.1362 Chr11 55030957 55064862 PREDICTED: Ceramide glucosyltransferase GO:0016757 K00720
gene-evm.TU.Chr11.1363 rna-evm.model.Chr11.1363 Chr11 55062173 55075048 PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial GO:0005525 K03650
gene-evm.TU.Chr11.1364 rna-evm.model.Chr11.1364 Chr11 55076098 55077884 uncharacterized protein nan K05802
gene-evm.TU.Chr11.1365 rna-evm.model.Chr11.1365 Chr11 55080887 55178354 PREDICTED: FERM domain-containing protein 5 GO:0005856;GO:0008092 K23969
gene-evm.TU.Chr11.1366 rna-evm.model.Chr11.1366 Chr11 55178475 55184340 PREDICTED: Probable gluconokinase nan K00851
gene-evm.TU.Chr11.1367 rna-evm.model.Chr11.1367 Chr11 55186322 55201170 PREDICTED: Dynein assembly factor 4, axonemal GO:0005515 K19758
gene-evm.TU.Chr11.1368 rna-evm.model.Chr11.1368 Chr11 55205512 55234465 PREDICTED: Major facilitator superfamily domain-containing protein 12 GO:0008643;GO:0015293;GO:0016020 K26437
gene-evm.TU.Chr11.1369 rna-evm.model.Chr11.1369 Chr11 55237864 55270819 PREDICTED: Bloom syndrome protein homolog GO:0003676;GO:0005524;GO:0006260;GO:0006281;GO:0043138 K10901
gene-evm.TU.Chr11.137 rna-evm.model.Chr11.137 Chr11 6053175 6062775 PREDICTED: Zinc finger protein 474 nan K25058
gene-evm.TU.Chr11.1370 rna-evm.model.Chr11.1370 Chr11 55267120 55268658 PREDICTED: Zinc finger protein 234 GO:0003676 K09228

For more detailed data, you can explore the Download section to access the full dataset.