CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1350 rna-evm.model.Chr11.1350 Chr11 54408207 54419891 PREDICTED: Translocon-associated protein subunit beta nan K13250
gene-evm.TU.Chr11.1351 rna-evm.model.Chr11.1351 Chr11 54420224 54433634 uncharacterized protein nan K12351
gene-evm.TU.Chr11.1352 rna-evm.model.Chr11.1352 Chr11 54438821 54458095 PREDICTED: Putative ammonium transporter 3 GO:0008519;GO:0072488;GO:0016020 K03320
gene-evm.TU.Chr11.1355 rna-evm.model.Chr11.1355 Chr11 54624568 54637260 PREDICTED: Forkhead box protein B1 GO:0003700;GO:0006355;GO:0043565 K09395
gene-evm.TU.Chr11.1356 rna-evm.model.Chr11.1356 Chr11 54653611 54664659 PREDICTED: Sorting nexin-24 GO:0035091 K17941
gene-evm.TU.Chr11.1358 rna-evm.model.Chr11.1358 Chr11 54905756 54905975 PREDICTED: arginine-glutamic acid dipeptide repeats protein nan nan
gene-evm.TU.Chr11.1359 rna-evm.model.Chr11.1359 Chr11 54972678 54978018 uncharacterized protein nan nan
gene-evm.TU.Chr11.136 rna-evm.model.Chr11.136 Chr11 6027373 6050961 PREDICTED: Serine/threonine-protein kinase RIO2 GO:0004674;GO:0005524;GO:0006468 K07179
gene-evm.TU.Chr11.1360 rna-evm.model.Chr11.1360 Chr11 54978927 54984539 PREDICTED: Cartilage matrix protein nan K06238
gene-evm.TU.Chr11.1361 rna-evm.model.Chr11.1361 Chr11 54991637 55018901 PREDICTED: Hillarin nan K24456

For more detailed data, you can explore the Download section to access the full dataset.