CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1339 rna-evm.model.Chr11.1339 Chr11 53988548 53990195 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase [EC:2.3.2.26] nan K17044
gene-evm.TU.Chr11.134 rna-evm.model.Chr11.134 Chr11 6006919 6022781 PREDICTED: E3 ubiquitin-protein ligase RNF115 GO:0061630 K11982
gene-evm.TU.Chr11.1340 rna-evm.model.Chr11.1340 Chr11 54044348 54044857 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan nan
gene-evm.TU.Chr11.1341 rna-evm.model.Chr11.1341 Chr11 54085214 54104122 PREDICTED: Protein FAM227B nan K22881
gene-evm.TU.Chr11.1342 rna-evm.model.Chr11.1342 Chr11 54248558 54254120 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K04810
gene-evm.TU.Chr11.1343 rna-evm.model.Chr11.1343 Chr11 54255649 54278108 PREDICTED: Thrombospondin-3 GO:0005509;GO:0005576;GO:0007155;GO:0008201 K04659
gene-evm.TU.Chr11.1346 rna-evm.model.Chr11.1346 Chr11 54282949 54286788 uncharacterized protein nan K24190
gene-evm.TU.Chr11.1348 rna-evm.model.Chr11.1348 Chr11 54365903 54389531 PREDICTED: Regulator of G-protein signaling 9-binding protein nan K25405
gene-evm.TU.Chr11.1349 rna-evm.model.Chr11.1349 Chr11 54398524 54405362 PREDICTED: Beta-1,4-galactosyltransferase 2 GO:0005975;GO:0016757 K07968
gene-evm.TU.Chr11.135 rna-evm.model.Chr11.135 Chr11 6023484 6026085 PREDICTED: Paternally-expressed gene 3 protein nan K23573

For more detailed data, you can explore the Download section to access the full dataset.