CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1325 rna-evm.model.Chr11.1325 Chr11 52833119 52850679 PREDICTED: Pentatricopeptide repeat-containing protein 2, mitochondrial GO:0005739;GO:0050684 K17711
gene-evm.TU.Chr11.1326 rna-evm.model.Chr11.1326 Chr11 52850930 52855332 PREDICTED: tRNA (adenine(37)-N6)-methyltransferase nan K22900
gene-evm.TU.Chr11.133 rna-evm.model.Chr11.133 Chr11 6004914 6005399 PREDICTED: retinitis pigmentosa 1 nan K21528
gene-evm.TU.Chr11.1330 rna-evm.model.Chr11.1330 Chr11 52988545 52993101 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K24675
gene-evm.TU.Chr11.1331 rna-evm.model.Chr11.1331 Chr11 53062797 53068677 PREDICTED: Mushroom body large-type Kenyon cell-specific protein 1 GO:0003677 K20015
gene-evm.TU.Chr11.1332 rna-evm.model.Chr11.1332 Chr11 53092216 53110670 PREDICTED: LINE-1 retrotransposable element ORF1 protein nan nan
gene-evm.TU.Chr11.1333 rna-evm.model.Chr11.1333 Chr11 53323594 53464495 PREDICTED: Zwei Ig domain protein zig-8 nan K06774
gene-evm.TU.Chr11.1334 rna-evm.model.Chr11.1334 Chr11 53457309 53458180 PREDICTED: calreticulin nan nan
gene-evm.TU.Chr11.1335 rna-evm.model.Chr11.1335 Chr11 53727204 53728830 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0003677 K24637
gene-evm.TU.Chr11.1336 rna-evm.model.Chr11.1336 Chr11 53729065 53729577 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0046983 K24637

For more detailed data, you can explore the Download section to access the full dataset.