CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1313 rna-evm.model.Chr11.1313 Chr11 52393895 52394662 uncharacterized protein nan nan
gene-evm.TU.Chr11.1317 rna-evm.model.Chr11.1317 Chr11 52642339 52643379 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K22594
gene-evm.TU.Chr11.1318 rna-evm.model.Chr11.1318 Chr11 52643487 52644434 uncharacterized protein nan K10750
gene-evm.TU.Chr11.1319 rna-evm.model.Chr11.1319 Chr11 52682399 52753013 PREDICTED: Adhesion G protein-coupled receptor L3 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04598
gene-evm.TU.Chr11.132 rna-evm.model.Chr11.132 Chr11 5991453 6003282 PREDICTED: Putative ammonium transporter 3 GO:0008519;GO:0072488;GO:0016020 K03320
gene-evm.TU.Chr11.1320 rna-evm.model.Chr11.1320 Chr11 52758990 52763286 PREDICTED: Cartilage matrix protein nan K06238
gene-evm.TU.Chr11.1321 rna-evm.model.Chr11.1321 Chr11 52765867 52786098 PREDICTED: Probable ATP-dependent RNA helicase DDX49 GO:0003676;GO:0005524 K14778
gene-evm.TU.Chr11.1322 rna-evm.model.Chr11.1322 Chr11 52789409 52791835 uncharacterized protein nan K11997
gene-evm.TU.Chr11.1323 rna-evm.model.Chr11.1323 Chr11 52796276 52798995 PREDICTED: Tripartite motif-containing protein 45 GO:0008270 K11997
gene-evm.TU.Chr11.1324 rna-evm.model.Chr11.1324 Chr11 52815910 52830893 PREDICTED: Pentatricopeptide repeat-containing protein 2, mitochondrial GO:0005739;GO:0050684 K17711

For more detailed data, you can explore the Download section to access the full dataset.