CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1301 rna-evm.model.Chr11.1301 Chr11 51742482 51748273 PREDICTED: Protein ABHD8 GO:0003824 K13701
gene-evm.TU.Chr11.1302 rna-evm.model.Chr11.1302 Chr11 51782092 51788149 PREDICTED: Exocyst complex component 2 nan K06821
gene-evm.TU.Chr11.1303 rna-evm.model.Chr11.1303 Chr11 51805465 51813474 PREDICTED: Protein FAM219A nan K18731
gene-evm.TU.Chr11.1304 rna-evm.model.Chr11.1304 Chr11 51815982 51836785 PREDICTED: Dynein intermediate chain 2, ciliary GO:0005515 K10409
gene-evm.TU.Chr11.1305 rna-evm.model.Chr11.1305 Chr11 51837800 51853596 PREDICTED: Fukutin-related protein nan K19873
gene-evm.TU.Chr11.1308 rna-evm.model.Chr11.1308 Chr11 52116932 52117579 PREDICTED: p24 family protein gamma-2 nan K10689
gene-evm.TU.Chr11.1309 rna-evm.model.Chr11.1309 Chr11 52214249 52217314 uncharacterized protein GO:0015074 nan
gene-evm.TU.Chr11.131 rna-evm.model.Chr11.131 Chr11 5988905 5990029 PREDICTED: Lysocardiolipin acyltransferase 1 GO:0016746 K13513
gene-evm.TU.Chr11.1311 rna-evm.model.Chr11.1311 Chr11 52342102 52354058 PREDICTED: C-C chemokine receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04177
gene-evm.TU.Chr11.1312 rna-evm.model.Chr11.1312 Chr11 52391296 52392911 PREDICTED: PHD finger protein ALFIN-LIKE 2 nan K26274

For more detailed data, you can explore the Download section to access the full dataset.