CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.129 rna-evm.model.Chr11.129 Chr11 5949295 5964828 PREDICTED: TIMELESS-interacting protein GO:0000076;GO:0005634;GO:0006974;GO:0048478 K10998
gene-evm.TU.Chr11.1290 rna-evm.model.Chr11.1290 Chr11 51434900 51435307 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan nan
gene-evm.TU.Chr11.1292 rna-evm.model.Chr11.1292 Chr11 51446909 51447316 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan nan
gene-evm.TU.Chr11.1294 rna-evm.model.Chr11.1294 Chr11 51448278 51448640 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr11.1295 rna-evm.model.Chr11.1295 Chr11 51451363 51452131 uncharacterized protein nan K07499
gene-evm.TU.Chr11.1296 rna-evm.model.Chr11.1296 Chr11 51453478 51468500 PREDICTED: Cyclin-dependent kinase 7 GO:0004672;GO:0005524;GO:0005675;GO:0006468;GO:0008353;GO:0070985 K02202
gene-evm.TU.Chr11.1297 rna-evm.model.Chr11.1297 Chr11 51473514 51474763 PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase nan K11714
gene-evm.TU.Chr11.1299 rna-evm.model.Chr11.1299 Chr11 51676850 51705303 PREDICTED: Cysteine-rich motor neuron 1 protein GO:0001558;GO:0005520;GO:0005576 K24518
gene-evm.TU.Chr11.130 rna-evm.model.Chr11.130 Chr11 5976461 5978466 PREDICTED: Lysocardiolipin acyltransferase 1 GO:0016746 K13513
gene-evm.TU.Chr11.1300 rna-evm.model.Chr11.1300 Chr11 51721654 51731743 PREDICTED: Ankyrin repeat and LEM domain-containing protein 1 GO:0004519;GO:0005515 K21411

For more detailed data, you can explore the Download section to access the full dataset.