CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1277 rna-evm.model.Chr11.1277 Chr11 51039880 51055585 PREDICTED: Phosphomevalonate kinase GO:0004631;GO:0005737;GO:0006695 K13273
gene-evm.TU.Chr11.128 rna-evm.model.Chr11.128 Chr11 5934235 5948003 PREDICTED: Geranylgeranyl transferase type-1 subunit beta GO:0003824 K11713
gene-evm.TU.Chr11.1281_evm.TU.Chr11.1279 rna-evm.model.Chr11.1281_evm.model.Chr11.1279 Chr11 51080861 51189501 PREDICTED: Thrombospondin type-1 domain-containing protein 4 GO:0008233 K23377
gene-evm.TU.Chr11.1282 rna-evm.model.Chr11.1282 Chr11 51194024 51224128 PREDICTED: Conserved oligomeric Golgi complex subunit 1 GO:0006891;GO:0017119 K20288
gene-evm.TU.Chr11.1283 rna-evm.model.Chr11.1283 Chr11 51227914 51234143 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr11.1284 rna-evm.model.Chr11.1284 Chr11 51242618 51248220 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr11.1285 rna-evm.model.Chr11.1285 Chr11 51253588 51412107 PREDICTED: Transient receptor potential cation channel subfamily M member 3 GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04978
gene-evm.TU.Chr11.1286 rna-evm.model.Chr11.1286 Chr11 51412242 51413663 PREDICTED: transient receptor potential cation channel subfamily M member 3 GO:0051262 K04978
gene-evm.TU.Chr11.1287 rna-evm.model.Chr11.1287 Chr11 51425351 51428191 PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein GO:0003676 K13155
gene-evm.TU.Chr11.1288 rna-evm.model.Chr11.1288 Chr11 51433576 51433938 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061

For more detailed data, you can explore the Download section to access the full dataset.