CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1262 rna-evm.model.Chr11.1262 Chr11 50003826 50007950 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1265 rna-evm.model.Chr11.1265 Chr11 50071714 50088030 PREDICTED: AF4/FMR2 family member 4 nan K17966
gene-evm.TU.Chr11.1266 rna-evm.model.Chr11.1266 Chr11 50110904 50113325 PREDICTED: SRC kinase signaling inhibitor 1 nan K07492
gene-evm.TU.Chr11.1267 rna-evm.model.Chr11.1267 Chr11 50292661 50292979 uncharacterized protein nan nan
gene-evm.TU.Chr11.1268 rna-evm.model.Chr11.1268 Chr11 50293045 50293617 uncharacterized protein nan K09847
gene-evm.TU.Chr11.1269 rna-evm.model.Chr11.1269 Chr11 50293639 50294673 uncharacterized protein nan K21356
gene-evm.TU.Chr11.127 rna-evm.model.Chr11.127 Chr11 5865818 5934157 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005509;GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr11.1271 rna-evm.model.Chr11.1271 Chr11 50412136 50419214 uncharacterized protein nan nan
gene-evm.TU.Chr11.1272 rna-evm.model.Chr11.1272 Chr11 50420691 50470990 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 1 nan K06772
gene-evm.TU.Chr11.1276 rna-evm.model.Chr11.1276 Chr11 51023130 51036754 PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase GO:0003723;GO:0004809;GO:0008033 K00555

For more detailed data, you can explore the Download section to access the full dataset.