CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1250 rna-evm.model.Chr11.1250 Chr11 49650687 49676090 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0004842;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr11.1251 rna-evm.model.Chr11.1251 Chr11 49682477 49700407 PREDICTED: meprin B [EC:3.4.24.63] nan K06849
gene-evm.TU.Chr11.1252 rna-evm.model.Chr11.1252 Chr11 49702161 49702622 PREDICTED: protein kinase D [EC:2.7.11.13] nan K09756
gene-evm.TU.Chr11.1253 rna-evm.model.Chr11.1253 Chr11 49715035 49755986 PREDICTED: Sulfotransferase 4A1 GO:0008146 K01016
gene-evm.TU.Chr11.1254 rna-evm.model.Chr11.1254 Chr11 49785742 49793897 uncharacterized protein nan nan
gene-evm.TU.Chr11.1256 rna-evm.model.Chr11.1256 Chr11 49813267 49814385 PREDICTED: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 nan K23222
gene-evm.TU.Chr11.1257 rna-evm.model.Chr11.1257 Chr11 49815517 49825067 PREDICTED: Trihelix transcription factor GTL1 nan K01587
gene-evm.TU.Chr11.1258 rna-evm.model.Chr11.1258 Chr11 49827745 49839878 PREDICTED: Tenascin-X nan K06252
gene-evm.TU.Chr11.126 rna-evm.model.Chr11.126 Chr11 5797353 5797913 PREDICTED: solute carrier family 15, member 5 nan K16466
gene-evm.TU.Chr11.1260 rna-evm.model.Chr11.1260 Chr11 49889405 49889600 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222

For more detailed data, you can explore the Download section to access the full dataset.