CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1241 rna-evm.model.Chr11.1241 Chr11 49451180 49456011 PREDICTED: Monomeric sarcosine oxidase GO:0016491;GO:0055114 K00306
gene-evm.TU.Chr11.1242 rna-evm.model.Chr11.1242 Chr11 49459731 49461610 PREDICTED: Glutaredoxin-like protein C5orf63 homolog nan K06191
gene-evm.TU.Chr11.1243 rna-evm.model.Chr11.1243.3 Chr11 49466843 49531437 PREDICTED: Tubulin polyglutamylase ttll6 GO:0036211 K16582
gene-evm.TU.Chr11.1244 rna-evm.model.Chr11.1244 Chr11 49532416 49538534 PREDICTED: Collagen alpha-4(VI) chain nan K06238
gene-evm.TU.Chr11.1245 rna-evm.model.Chr11.1245 Chr11 49542602 49545376 uncharacterized protein nan K01992
gene-evm.TU.Chr11.1246 rna-evm.model.Chr11.1246 Chr11 49545773 49558429 PREDICTED: Collagen alpha-6(VI) chain nan K06238
gene-evm.TU.Chr11.1247 rna-evm.model.Chr11.1247 Chr11 49563125 49581125 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr11.1248 rna-evm.model.Chr11.1248 Chr11 49586830 49623441 PREDICTED: RNA polymerase II elongation factor ELL2 GO:0006368;GO:0008023 K15183
gene-evm.TU.Chr11.1249 rna-evm.model.Chr11.1249 Chr11 49640841 49647883 PREDICTED: E3 ubiquitin-protein ligase MARCH2 GO:0008270 K10657
gene-evm.TU.Chr11.125 rna-evm.model.Chr11.125 Chr11 5796651 5797346 PREDICTED: eukaryotic translation initiation factor 2C nan K07497

For more detailed data, you can explore the Download section to access the full dataset.