CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1231 rna-evm.model.Chr11.1231 Chr11 49085185 49092330 uncharacterized protein nan K24190
gene-evm.TU.Chr11.1232 rna-evm.model.Chr11.1232 Chr11 49099495 49113629 PREDICTED: Protein madd-4 GO:0008233 K24429
gene-evm.TU.Chr11.1233 rna-evm.model.Chr11.1233 Chr11 49190060 49194576 uncharacterized protein nan K24659
gene-evm.TU.Chr11.1235 rna-evm.model.Chr11.1235 Chr11 49250106 49250639 PREDICTED: Neuropeptide Y receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr11.1236 rna-evm.model.Chr11.1236 Chr11 49250661 49251326 PREDICTED: 5-hydroxytryptamine receptor 1A GO:0004930;GO:0007186;GO:0016020 K04195
gene-evm.TU.Chr11.1237 rna-evm.model.Chr11.1237 Chr11 49281621 49298985 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr11.1238 rna-evm.model.Chr11.1238 Chr11 49303935 49319527 PREDICTED: Endonuclease 8-like 1 GO:0003684;GO:0003906;GO:0006284;GO:0008270;GO:0016799 K10567
gene-evm.TU.Chr11.1239 rna-evm.model.Chr11.1239 Chr11 49436284 49437522 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.124 rna-evm.model.Chr11.124 Chr11 5783757 5793179 PREDICTED: Probable serine/threonine-protein kinase drkD GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr11.1240 rna-evm.model.Chr11.1240 Chr11 49441186 49447124 PREDICTED: Monomeric sarcosine oxidase GO:0016491;GO:0055114 K00306

For more detailed data, you can explore the Download section to access the full dataset.