CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1218 rna-evm.model.Chr11.1218 Chr11 48370508 48371693 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr11.122 rna-evm.model.Chr11.122 Chr11 5772466 5774599 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr11.1222 rna-evm.model.Chr11.1222 Chr11 48780621 48882763 PREDICTED: Phorbol ester/diacylglycerol-binding protein unc-13 GO:0007268;GO:0019992;GO:0035556 K15293
gene-evm.TU.Chr11.1223 rna-evm.model.Chr11.1223 Chr11 48892821 48910115 PREDICTED: Voltage-gated hydrogen channel 1 GO:0005216;GO:0005886;GO:0006811;GO:0016020;GO:0030171;GO:0055085;GO:1902600 K22644
gene-evm.TU.Chr11.1224 rna-evm.model.Chr11.1224 Chr11 48960368 48975529 PREDICTED: Protein madd-4 GO:0008233 K24429
gene-evm.TU.Chr11.1225 rna-evm.model.Chr11.1225 Chr11 48978896 48989840 uncharacterized protein nan K24190
gene-evm.TU.Chr11.1226 rna-evm.model.Chr11.1226 Chr11 48993260 49015739 PREDICTED: Calpain-2 catalytic subunit GO:0004198;GO:0006508 K08578
gene-evm.TU.Chr11.1227 rna-evm.model.Chr11.1227 Chr11 49016167 49022751 PREDICTED: Zonadhesin nan K03006
gene-evm.TU.Chr11.1228 rna-evm.model.Chr11.1228 Chr11 49028212 49048273 uncharacterized protein nan nan
gene-evm.TU.Chr11.1229_evm.TU.Chr11.1230 rna-evm.model.Chr11.1229_evm.model.Chr11.1230 Chr11 49052305 49084530 PREDICTED: Calpain-8 GO:0004198;GO:0006508 K08578

For more detailed data, you can explore the Download section to access the full dataset.