CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1209 rna-evm.model.Chr11.1209 Chr11 48139994 48158477 PREDICTED: Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form nan K19200
gene-evm.TU.Chr11.121 rna-evm.model.Chr11.121 Chr11 5770397 5771200 PREDICTED: solute carrier family 15, member 5 nan K05861
gene-evm.TU.Chr11.1210 rna-evm.model.Chr11.1210 Chr11 48164345 48179114 PREDICTED: MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 4 nan K08190
gene-evm.TU.Chr11.1211 rna-evm.model.Chr11.1211 Chr11 48187285 48190009 uncharacterized protein nan K24190
gene-evm.TU.Chr11.1212 rna-evm.model.Chr11.1212 Chr11 48197000 48215002 PREDICTED: Secretory carrier-associated membrane protein 1 GO:0015031;GO:0016020 K19995
gene-evm.TU.Chr11.1213 rna-evm.model.Chr11.1213 Chr11 48221830 48244291 PREDICTED: Methyl-CpG-binding domain protein 2 GO:0003677;GO:0005634;GO:0008327;GO:0016581 K11590
gene-evm.TU.Chr11.1214 rna-evm.model.Chr11.1214 Chr11 48245403 48270535 PREDICTED: SH2 domain-containing adapter protein F nan K23697
gene-evm.TU.Chr11.1215 rna-evm.model.Chr11.1215 Chr11 48279029 48297525 PREDICTED: Junction-mediating and -regulatory protein nan K24045
gene-evm.TU.Chr11.1216 rna-evm.model.Chr11.1216 Chr11 48304774 48315402 PREDICTED: Mesenchyme-specific cell surface glycoprotein nan K07404
gene-evm.TU.Chr11.1217 rna-evm.model.Chr11.1217 Chr11 48317497 48326187 PREDICTED: Mesenchyme-specific cell surface glycoprotein nan K19648

For more detailed data, you can explore the Download section to access the full dataset.