CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1199 rna-evm.model.Chr11.1199 Chr11 47971955 47972254 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D nan nan
gene-evm.TU.Chr11.120 rna-evm.model.Chr11.120 Chr11 5769879 5770217 uncharacterized protein nan nan
gene-evm.TU.Chr11.1200 rna-evm.model.Chr11.1200 Chr11 47975006 47987102 PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial GO:0016651;GO:0022900 K03937
gene-evm.TU.Chr11.1201 rna-evm.model.Chr11.1201 Chr11 47990459 47994116 PREDICTED: Cytosolic iron-sulfur assembly component 2A GO:0106035 K26403
gene-evm.TU.Chr11.1202 rna-evm.model.Chr11.1202 Chr11 48012820 48026393 PREDICTED: Uncharacterized protein C3orf38 homolog nan nan
gene-evm.TU.Chr11.1203 rna-evm.model.Chr11.1203 Chr11 48039817 48050992 PREDICTED: Serum response factor-binding protein 1 nan K24983
gene-evm.TU.Chr11.1205 rna-evm.model.Chr11.1205 Chr11 48078212 48079138 PREDICTED: charged multivesicular body protein 7 nan nan
gene-evm.TU.Chr11.1206 rna-evm.model.Chr11.1206 Chr11 48084485 48095840 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 nan K11353
gene-evm.TU.Chr11.1207 rna-evm.model.Chr11.1207 Chr11 48098349 48105433 PREDICTED: Arrestin domain-containing protein 17 nan K26229
gene-evm.TU.Chr11.1208 rna-evm.model.Chr11.1208 Chr11 48114293 48120913 PREDICTED: Zonadhesin nan K12887

For more detailed data, you can explore the Download section to access the full dataset.