CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1183 rna-evm.model.Chr11.1183 Chr11 47589747 47610329 PREDICTED: Photoreceptor-specific nuclear receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08546
gene-evm.TU.Chr11.1186 rna-evm.model.Chr11.1186 Chr11 47721790 47739378 PREDICTED: SKI family transcriptional corepressor 1 homolog-B GO:0046332 K26503
gene-evm.TU.Chr11.1189 rna-evm.model.Chr11.1189 Chr11 47772694 47791944 PREDICTED: Solute carrier family 12 member 2 GO:0005215;GO:0006811;GO:0016020;GO:0055085 K10951
gene-evm.TU.Chr11.1190 rna-evm.model.Chr11.1190 Chr11 47797044 47812328 PREDICTED: Solute carrier family 12 member 2 GO:0005215;GO:0006811;GO:0016020;GO:0055085 K10951
gene-evm.TU.Chr11.1192 rna-evm.model.Chr11.1192 Chr11 47838122 47851437 PREDICTED: Ankyrin repeat domain-containing protein 2 GO:0005515 K02580
gene-evm.TU.Chr11.1193 rna-evm.model.Chr11.1193 Chr11 47857116 47894680 PREDICTED: KH homology domain-containing protein 4 GO:0003723;GO:0005634 K25780
gene-evm.TU.Chr11.1194 rna-evm.model.Chr11.1194 Chr11 47895128 47905357 PREDICTED: Telomere repeats-binding bouquet formation protein 2 nan K25750
gene-evm.TU.Chr11.1195 rna-evm.model.Chr11.1195 Chr11 47916230 47923764 uncharacterized protein nan nan
gene-evm.TU.Chr11.1196 rna-evm.model.Chr11.1196 Chr11 47933177 47938136 PREDICTED: MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 10 nan K11810
gene-evm.TU.Chr11.1197 rna-evm.model.Chr11.1197 Chr11 47951150 47952915 PREDICTED: Gastrin/cholecystokinin type B receptor GO:0004930;GO:0007186;GO:0016020 K04195

For more detailed data, you can explore the Download section to access the full dataset.