CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1477 rna-evm.model.Chr1.1477 Chr1 48105644 48111589 PREDICTED: Protein NLRC5 nan K12805
gene-evm.TU.Chr1.1478 rna-evm.model.Chr1.1478 Chr1 48138293 48164922 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.148 rna-evm.model.Chr1.148 Chr1 4973307 4985599 PREDICTED: F-box/LRR-repeat protein 7 GO:0005515 K10268
gene-evm.TU.Chr1.1480 rna-evm.model.Chr1.1480 Chr1 48201257 48207516 PREDICTED: Protein NLRC5 nan K12805
gene-evm.TU.Chr1.1481 rna-evm.model.Chr1.1481 Chr1 48225512 48235305 PREDICTED: Pirin nan K06911
gene-evm.TU.Chr1.1484 rna-evm.model.Chr1.1484.1 Chr1 48600841 48670763 PREDICTED: Teneurin-m nan K24473
gene-evm.TU.Chr1.1485 rna-evm.model.Chr1.1485 Chr1 48551580 48856973 PREDICTED: Teneurin-m nan K24473
gene-evm.TU.Chr1.1487_evm.TU.Chr1.1489_evm.TU.Chr1.1491 rna-evm.model.Chr1.1487_evm.model.Chr1.1489_evm.model.Chr1.1491 Chr1 48911429 49023540 PREDICTED: Probable tRNA methyltransferase 9B GO:0008168 K10770
gene-evm.TU.Chr1.1488_evm.TU.Chr1.1486 rna-evm.model.Chr1.1488_evm.model.Chr1.1486 Chr1 48861460 48941337 PREDICTED: Lipoyl synthase, mitochondrial GO:0003824;GO:0009107;GO:0016992;GO:0051536;GO:0051539 K03644
gene-evm.TU.Chr1.149 rna-evm.model.Chr1.149 Chr1 4988534 4992387 PREDICTED: Peptidase inhibitor 16 nan K10306

For more detailed data, you can explore the Download section to access the full dataset.