CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1447_evm.TU.Chr1.1448 rna-evm.model.Chr1.1447_evm.model.Chr1.1448 Chr1 46656817 46725918 PREDICTED: Cyclic nucleotide-gated cation channel alpha-3 GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04949
gene-evm.TU.Chr1.145 rna-evm.model.Chr1.145 Chr1 4901299 4903902 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr1.1450 rna-evm.model.Chr1.1450 Chr1 46863897 46890500 PREDICTED: ATP-binding cassette sub-family E member 1 GO:0005524;GO:0016887 K06174
gene-evm.TU.Chr1.1451 rna-evm.model.Chr1.1451 Chr1 46884239 46887980 uncharacterized protein GO:0003676 K22534
gene-evm.TU.Chr1.1454 rna-evm.model.Chr1.1454 Chr1 47168981 47213238 PREDICTED: Carbonic anhydrase-related protein 10 GO:0004089;GO:0008270 K01672
gene-evm.TU.Chr1.1457 rna-evm.model.Chr1.1457 Chr1 47423946 47424675 PREDICTED: BRISC and BRCA1-A complex member 1 nan K06456
gene-evm.TU.Chr1.1458 rna-evm.model.Chr1.1458 Chr1 47430154 47433349 PREDICTED: elongation factor Ts nan K10054
gene-evm.TU.Chr1.1459 rna-evm.model.Chr1.1459 Chr1 47433478 47436008 uncharacterized protein nan K07916
gene-evm.TU.Chr1.146 rna-evm.model.Chr1.146 Chr1 4908330 4910045 PREDICTED: Transcription intermediary factor 1-alpha nan K12026
gene-evm.TU.Chr1.1461 rna-evm.model.Chr1.1461 Chr1 47448019 47449041 PREDICTED: THAP domain-containing protein 11 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.