CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1490 rna-evm.model.Chr1.1490 Chr1 48988642 49013565 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr1.1492 rna-evm.model.Chr1.1492 Chr1 49035884 49055169 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr1.1494 rna-evm.model.Chr1.1494 Chr1 49072040 49074122 PREDICTED: Pro-Pol polyprotein nan K21037
gene-evm.TU.Chr1.1495 rna-evm.model.Chr1.1495 Chr1 49084397 49099714 PREDICTED: Alpha-1D adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04131
gene-evm.TU.Chr1.1496 rna-evm.model.Chr1.1496 Chr1 49099889 49111425 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr1.1498 rna-evm.model.Chr1.1498 Chr1 49155781 49157592 uncharacterized protein GO:0005524 K07459
gene-evm.TU.Chr1.1499 rna-evm.model.Chr1.1499 Chr1 49210447 49214936 uncharacterized protein nan nan
gene-evm.TU.Chr1.150 rna-evm.model.Chr1.150 Chr1 4994207 5084969 PREDICTED: Cadherin-related tumor suppressor GO:0005509;GO:0007156;GO:0016020 K04600
gene-evm.TU.Chr1.1500 rna-evm.model.Chr1.1500 Chr1 49225805 49227875 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr1.1501 rna-evm.model.Chr1.1501 Chr1 49229648 49239671 PREDICTED: Beta-sarcoglycan GO:0007517;GO:0016012;GO:0016020 K12566

For more detailed data, you can explore the Download section to access the full dataset.