CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1515 rna-evm.model.Chr1.1515 Chr1 49613604 49620100 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan nan
gene-evm.TU.Chr1.1516 rna-evm.model.Chr1.1516 Chr1 49620439 49621723 PREDICTED: Exodeoxyribonuclease III nan nan
gene-evm.TU.Chr1.1517 rna-evm.model.Chr1.1517 Chr1 49621819 49624132 uncharacterized protein nan nan
gene-evm.TU.Chr1.1518 rna-evm.model.Chr1.1518 Chr1 49624255 49637122 PREDICTED: Decapping and exoribonuclease protein nan K14845
gene-evm.TU.Chr1.1519 rna-evm.model.Chr1.1519 Chr1 49640694 49672358 PREDICTED: Notch 2 nan K26089
gene-evm.TU.Chr1.152 rna-evm.model.Chr1.152 Chr1 5102634 5104434 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr1.1520 rna-evm.model.Chr1.1520 Chr1 49720399 49725377 PREDICTED: Collagen alpha-1(IV) chain nan K19719
gene-evm.TU.Chr1.1521 rna-evm.model.Chr1.1521 Chr1 49753084 49761367 PREDICTED: Collagen alpha-1(XXIV) chain nan K24214
gene-evm.TU.Chr1.1522 rna-evm.model.Chr1.1522 Chr1 49773745 49775565 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr1.1524 rna-evm.model.Chr1.1524 Chr1 49816514 49824086 PREDICTED: 60S ribosomal protein L9 GO:0003735;GO:0005840;GO:0006412;GO:0019843 K02940

For more detailed data, you can explore the Download section to access the full dataset.