CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1526 rna-evm.model.Chr1.1526 Chr1 49865824 49868993 PREDICTED: Transposable element Tcb2 transposase nan nan
gene-evm.TU.Chr1.1527 rna-evm.model.Chr1.1527 Chr1 49878636 49895014 PREDICTED: 60S ribosomal protein L9 GO:0003735;GO:0005840;GO:0006412;GO:0019843 K02940
gene-evm.TU.Chr1.1528_evm.TU.Chr1.1532 rna-evm.model.Chr1.1528_evm.model.Chr1.1532 Chr1 49897076 49988881 PREDICTED: Protein YIPF5 GO:0016020 K20363
gene-evm.TU.Chr1.1529 rna-evm.model.Chr1.1529 Chr1 49913809 49914578 uncharacterized protein nan K15711
gene-evm.TU.Chr1.153 rna-evm.model.Chr1.153 Chr1 5172930 5173620 PREDICTED: Stress response protein nst1 nan K24630
gene-evm.TU.Chr1.1530 rna-evm.model.Chr1.1530 Chr1 49924241 49926673 PREDICTED: Immunoglobulin superfamily member 10 GO:0005515 K20230
gene-evm.TU.Chr1.1534 rna-evm.model.Chr1.1534 Chr1 50106968 50130174 PREDICTED: Periostin nan K24790
gene-evm.TU.Chr1.154 rna-evm.model.Chr1.154 Chr1 5168832 5202900 PREDICTED: Lysosomal Pro-X carboxypeptidase GO:0006508;GO:0008236 K01285
gene-evm.TU.Chr1.1540 rna-evm.model.Chr1.1540 Chr1 50222006 50233968 uncharacterized protein nan nan
gene-evm.TU.Chr1.1541 rna-evm.model.Chr1.1541 Chr1 50236225 50313045 PREDICTED: F-BAR and double SH3 domains protein 2 GO:0005515 K20125

For more detailed data, you can explore the Download section to access the full dataset.