CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1432 rna-evm.model.Chr1.1432 Chr1 46000063 46005776 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.1433 rna-evm.model.Chr1.1433 Chr1 46013683 46015987 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.1434 rna-evm.model.Chr1.1434 Chr1 46095596 46098478 uncharacterized protein nan K23896
gene-evm.TU.Chr1.1438 rna-evm.model.Chr1.1438 Chr1 46225309 46231272 PREDICTED: protein shisa-5-like nan K24616
gene-evm.TU.Chr1.1439 rna-evm.model.Chr1.1439 Chr1 46244929 46254294 uncharacterized protein nan K14532
gene-evm.TU.Chr1.144 rna-evm.model.Chr1.144 Chr1 4887550 4899235 PREDICTED: Receptor-type tyrosine-protein phosphatase mu GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr1.1440 rna-evm.model.Chr1.1440 Chr1 46275782 46296010 PREDICTED: Alkali-sensitive linkage protein 1 nan K23005
gene-evm.TU.Chr1.1444 rna-evm.model.Chr1.1444 Chr1 46360463 46370447 PREDICTED: Proline-rich receptor-like protein kinase PERK1 nan K11244
gene-evm.TU.Chr1.1445 rna-evm.model.Chr1.1445 Chr1 46372585 46388727 PREDICTED: DNA-binding protein SMUBP-2 nan K19036
gene-evm.TU.Chr1.1446 rna-evm.model.Chr1.1446 Chr1 46382839 46402429 PREDICTED: DNA-binding protein SMUBP-2 GO:0003676;GO:0008270 K19036

For more detailed data, you can explore the Download section to access the full dataset.