CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1462 rna-evm.model.Chr1.1462 Chr1 47450776 47454050 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr1.1463 rna-evm.model.Chr1.1463 Chr1 47522599 47523297 uncharacterized protein nan K06896
gene-evm.TU.Chr1.1467 rna-evm.model.Chr1.1467 Chr1 47566126 47576929 PREDICTED: Transient receptor potential cation channel subfamily A member 1 homolog GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04984
gene-evm.TU.Chr1.1468 rna-evm.model.Chr1.1468 Chr1 47663673 47672948 PREDICTED: Delta-like protein D GO:0005509;GO:0005576;GO:0006030;GO:0008061 K06051
gene-evm.TU.Chr1.147 rna-evm.model.Chr1.147 Chr1 4913354 4948807 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016020;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr1.1470 rna-evm.model.Chr1.1470 Chr1 47778440 47778841 PREDICTED: Transposable element Tcb2 transposase nan K07494
gene-evm.TU.Chr1.1471 rna-evm.model.Chr1.1471 Chr1 47779045 47779464 PREDICTED: calcium permeable stress-gated cation channel nan K07499
gene-evm.TU.Chr1.1472 rna-evm.model.Chr1.1472 Chr1 47794508 47796098 PREDICTED: trichohyalin nan K14590
gene-evm.TU.Chr1.1473 rna-evm.model.Chr1.1473 Chr1 47833340 47834364 PREDICTED: Transposable element Tc3 transposase nan K07494
gene-evm.TU.Chr1.1476 rna-evm.model.Chr1.1476 Chr1 48073017 48092297 PREDICTED: Pirin nan K06911

For more detailed data, you can explore the Download section to access the full dataset.