CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1502 rna-evm.model.Chr1.1502 Chr1 49281830 49282009 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr1.1503 rna-evm.model.Chr1.1503 Chr1 49288882 49290628 PREDICTED: Protein lethal(2)essential for life nan K09542
gene-evm.TU.Chr1.1504 rna-evm.model.Chr1.1504 Chr1 49290914 49303420 PREDICTED: Putative ankyrin repeat protein FPV024 GO:0005515 K21440
gene-evm.TU.Chr1.1505 rna-evm.model.Chr1.1505 Chr1 49309940 49316276 uncharacterized protein nan K19665
gene-evm.TU.Chr1.1507 rna-evm.model.Chr1.1507 Chr1 49406131 49465889 PREDICTED: putative GPI-anchored protein PB15E9.01c nan K12047
gene-evm.TU.Chr1.1509 rna-evm.model.Chr1.1509 Chr1 49483909 49510884 PREDICTED: UPF0462 protein C4orf33 homolog nan K24295
gene-evm.TU.Chr1.151 rna-evm.model.Chr1.151 Chr1 5094219 5100698 PREDICTED: Signal peptidase complex subunit 3 GO:0005787;GO:0006465;GO:0008233;GO:0016020 K12948
gene-evm.TU.Chr1.1511 rna-evm.model.Chr1.1511 Chr1 49529702 49530256 uncharacterized protein nan K06896
gene-evm.TU.Chr1.1513 rna-evm.model.Chr1.1513 Chr1 49557280 49591399 PREDICTED: Sodium- and chloride-dependent GABA transporter 2 GO:0016020 K05039
gene-evm.TU.Chr1.1514 rna-evm.model.Chr1.1514 Chr1 49600364 49608039 PREDICTED: Decapping and exoribonuclease protein nan K14845

For more detailed data, you can explore the Download section to access the full dataset.