CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1405 rna-evm.model.Chr1.1405 Chr1 45074845 45077129 PREDICTED: protein shisa-5-like nan K24616
gene-evm.TU.Chr1.1406 rna-evm.model.Chr1.1406 Chr1 45149465 45151788 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.141 rna-evm.model.Chr1.141 Chr1 4680947 4782952 PREDICTED: Receptor-type tyrosine-protein phosphatase mu GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.1411 rna-evm.model.Chr1.1411 Chr1 45355271 45359724 PREDICTED: Integrase/recombinase xerD homolog nan K06245
gene-evm.TU.Chr1.1412 rna-evm.model.Chr1.1412 Chr1 45369344 45371691 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.1415 rna-evm.model.Chr1.1415 Chr1 45459482 45462799 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.1416 rna-evm.model.Chr1.1416.1 Chr1 45468598 45473047 PREDICTED: interferon induced transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.1417 rna-evm.model.Chr1.1417 Chr1 45510652 45516901 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.1418 rna-evm.model.Chr1.1418 Chr1 45521376 45524684 PREDICTED: Synapse differentiation-inducing gene protein 1-like GO:0016020 K23896
gene-evm.TU.Chr1.1420 rna-evm.model.Chr1.1420 Chr1 45546735 45548147 PREDICTED: tetraspanin-33 GO:0008270 K21233

For more detailed data, you can explore the Download section to access the full dataset.