CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1171 rna-evm.model.Chr11.1171 Chr11 47279815 47285841 PREDICTED: Forkhead box protein A1 GO:0003700;GO:0006355;GO:0043565 K09395
gene-evm.TU.Chr11.1173 rna-evm.model.Chr11.1173 Chr11 47326080 47326619 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1174 rna-evm.model.Chr11.1174 Chr11 47387767 47398044 PREDICTED: protein shisa-4-like nan K24360
gene-evm.TU.Chr11.1175 rna-evm.model.Chr11.1175 Chr11 47408661 47472500 PREDICTED: Phosphatidylinositol 3-kinase catalytic subunit type 3 GO:0046854;GO:0048015 K00914
gene-evm.TU.Chr11.1176 rna-evm.model.Chr11.1176 Chr11 47480122 47482512 uncharacterized protein nan nan
gene-evm.TU.Chr11.1177 rna-evm.model.Chr11.1177 Chr11 47482408 47488321 PREDICTED: Transcription intermediary factor 1-beta nan K12026
gene-evm.TU.Chr11.118 rna-evm.model.Chr11.118 Chr11 5368196 5370829 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.1180 rna-evm.model.Chr11.1180 Chr11 47524238 47548314 PREDICTED: Non-lysosomal glucosylceramidase GO:0004553 K17108
gene-evm.TU.Chr11.1181 rna-evm.model.Chr11.1181 Chr11 47560173 47572919 PREDICTED: Uromodulin GO:0005509 K17307
gene-evm.TU.Chr11.1182 rna-evm.model.Chr11.1182 Chr11 47578683 47581750 PREDICTED: glycine-rich cell wall structural protein 1.8-like nan K10385

For more detailed data, you can explore the Download section to access the full dataset.